Merge Logistic Regression and Solo PPV Statistics — merge_logreg

This function merges logistic regression model statistics with solo PPV statistics and creates a combined plot.

Usage

merge_logreg_soloppv(model, solo_stats, title = NULL, plot = TRUE)

Arguments

model: A data frame containing logistic regression model statistics.
solo_stats: A data frame containing solo PPV statistics.
title: An optional title for the plot.
plot: Logical indicating whether to generate the plot.

Value

A list containing:

combined: A merged data frame of logistic regression and PPV statistics.
plot: A ggplot object showing the relationship between model estimates and PPV.

Examples

if (FALSE) { # \dontrun{
soloPPV_cipro <- solo_ppv_analysis(ecoli_geno, ecoli_ast,
  antibiotic = "Ciprofloxacin",
  drug_class_list = c("Quinolones"),
  sir_col = "pheno"
)
logistic_cipro <- amr_logistic(ecoli_geno, ecoli_ast,
  "Ciprofloxacin", c("Quinolones"),
  maf = 5
)
allstatsR <- merge_logreg_soloppv(logistic_cipro$modelR,
  soloPPV_cipro$solo_stats %>% filter(category == "R"),
  title = "Quinolone markers vs Cip R"
)
} # }